STRINGSTRING
Phatr8663 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8663" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8663Predicted protein (187 aa)    
Predicted Functional Partners:
Phatr43677
Predicted protein (813 aa)
       
 
  0.655
Phatr38965
Predicted protein (1383 aa)
       
 
  0.655
Phatr26775
Predicted protein (593 aa)
       
 
  0.655
Phatr23306
Predicted protein (908 aa)
       
 
  0.655
Phatrdraft559
Predicted protein (368 aa)
   
 
  0.653
Phatr7678
Predicted protein (134 aa)
   
 
  0.653
Phatr47250
Phosphatidate cytidylyltransferase (574 aa)
   
 
  0.653
Phatr47067
Predicted protein (1237 aa)
         
  0.560
CDS1
Phosphatidate cytidylyltransferase (377 aa)
       
  0.540
secA
Protein translocase subunit secA (935 aa)
         
  0.533
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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