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STRINGSTRING
Phatr8720 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8720" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8720Predicted protein; Belongs to the bacterial ribosomal protein bL17 family (116 aa)    
Predicted Functional Partners:
Phatr29097
Predicted protein; Belongs to the universal ribosomal protein uS7 family (225 aa)
   
 
  0.916
Phatr9894
Predicted protein (140 aa)
   
 
  0.915
Phatr11799
Predicted protein (84 aa)
     
 
  0.911
Phatr14713
Predicted protein (137 aa)
   
 
  0.911
Phatr19103
Predicted protein (102 aa)
   
 
  0.901
Phatr10617
Predicted protein; Belongs to the universal ribosomal protein uL3 family (229 aa)
   
 
  0.901
Phatr42848
Predicted protein; Belongs to the universal ribosomal protein uS5 family (380 aa)
   
 
  0.896
Phatr12238
Predicted protein (184 aa)
   
 
  0.894
Phatr14535
Predicted protein (102 aa)
   
 
  0.891
Phatr23324
Predicted protein; Belongs to the universal ribosomal protein uL5 family (176 aa)
   
 
  0.885
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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