STRINGSTRING
Phatr8741 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8741" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8741Predicted protein (92 aa)    
Predicted Functional Partners:
CHC
Predicted protein; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)
       
  0.947
AP1alpha
Predicted protein (1019 aa)
     
  0.936
sUbi
Ubiquitin-like protein (268 aa)
       
  0.858
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.858
Phatr49037
Predicted protein (205 aa)
       
  0.858
Phatr16891
Predicted protein (450 aa)
     
  0.802
Phatr13511
Predicted protein (939 aa)
     
  0.802
Phatrdraft1735
Predicted protein (890 aa)
     
  0.771
AP4beta
Predicted protein (805 aa)
     
  0.771
UBI3
Ubiquitin extension protein 3 (155 aa)
       
  0.692
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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