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STRINGSTRING
Skp1_3 protein (Phaeodactylum tricornutum) - STRING interaction network
"Skp1_3" - S-phase kinase-associated protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Skp1_3S-phase kinase-associated protein; Belongs to the SKP1 family (158 aa)    
Predicted Functional Partners:
Rbx1
Predicted protein (134 aa)
     
 
  0.860
Phatr47824
Predicted protein (469 aa)
       
 
  0.845
Phatr11363
Predicted protein (213 aa)
     
 
  0.815
CSN5
COP9 SigNalosome subunit 5 (370 aa)
     
 
  0.751
Phatr28433
Ubiquitin carrier protein; Belongs to the ubiquitin-conjugating enzyme family (167 aa)
     
 
  0.735
APC11
Predicted protein (82 aa)
     
 
  0.735
CUL1_2
CULlin protein 4; Belongs to the cullin family (821 aa)
     
 
  0.700
Phatr36569
Predicted protein (166 aa)
     
 
  0.687
CUL1_3
CULlin protein 1; Belongs to the cullin family (741 aa)
     
 
  0.687
CUL1_1
CULlin protein 3; Belongs to the cullin family (762 aa)
     
 
  0.687
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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