STRINGSTRING
Phatr8827 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8827" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8827Predicted protein (219 aa)    
Predicted Functional Partners:
Phatr45431
Predicted protein (1158 aa)
   
  0.839
Phatr8891
Predicted protein (223 aa)
   
  0.772
Phatr50482
Predicted protein (1188 aa)
   
  0.772
Phatr45906
Predicted protein (693 aa)
   
  0.772
Phatr4423
Predicted protein (284 aa)
   
  0.772
Phatr43919
Predicted protein (407 aa)
   
  0.772
Phatr35869
Predicted protein (534 aa)
   
  0.772
Phatr45764
Predicted protein (1603 aa)
     
  0.697
Phatr45703
Predicted protein (2426 aa)
     
  0.697
Phatr34971
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
       
  0.685
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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