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STRINGSTRING
Phatr8828 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8828" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8828Predicted protein (291 aa)    
Predicted Functional Partners:
Phatr29885
Predicted protein; Belongs to the PdxS/SNZ family (336 aa)
   
  0.984
Phatr47510
Predicted protein (381 aa)
   
 
  0.907
Phatr47090
Predicted protein (303 aa)
         
    0.900
Phatr5423
Predicted protein (226 aa)
         
  0.863
Phatr5762
Predicted protein (236 aa)
     
   
  0.847
Phatr17427
Predicted protein (695 aa)
         
  0.796
Phatr5532
Predicted protein (238 aa)
           
  0.770
Phatr27923
Predicted protein (623 aa)
 
 
        0.714
Phatr51242
Predicted protein (342 aa)
     
   
  0.687
Phatr45308
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway (709 aa)
     
   
  0.672
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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