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STRINGSTRING
LCYB protein (Phaeodactylum tricornutum) - STRING interaction network
"LCYB" - Precursor of cyclase lycopene beta cyclase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCYBPrecursor of cyclase lycopene beta cyclase (261 aa)    
Predicted Functional Partners:
VDE
Violaxanthin deepoxidase (262 aa)
     
   
  0.906
Phatr12330
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (159 aa)
     
   
  0.903
PSY
Phytoene synthase (309 aa)
     
   
  0.837
MK
Mevalonate kinase (490 aa)
           
  0.831
Phatr16955
Predicted protein (231 aa)
     
   
  0.798
FABG
3-oxoacyl-[acyl-carrier protein (253 aa)
           
  0.798
MPDC
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes (415 aa)
           
  0.767
DXR
1-deoxy-d-xylulose-5-phosphate reductoisomerase (402 aa)
     
   
  0.762
HDR
Hydroxymethylbutenyl diphosphate reductase; Putative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase (401 aa)
     
   
  0.709
ZEP3
Zeaxanthin epoxidase (391 aa)
     
   
  0.707
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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