STRINGSTRING
LCYB protein (Phaeodactylum tricornutum) - STRING interaction network
"LCYB" - Precursor of cyclase lycopene beta cyclase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCYBPrecursor of cyclase lycopene beta cyclase (261 aa)    
Predicted Functional Partners:
ZDS
Zeta-carotene desaturase (495 aa)
     
   
  0.676
PDS2
Phytoene desaturase (589 aa)
     
   
  0.655
PSY
Phytoene synthase (309 aa)
     
   
  0.634
PDS1
Phytoene dehydrogenase (597 aa)
     
   
  0.537
DXR
1-deoxy-d-xylulose-5-phosphate reductoisomerase (402 aa)
     
   
  0.483
HSP70A
Protein heat shock protein Hsp70 (653 aa)
           
  0.480
VDL1
Precursor of protein violaxanthin deepoxidase-like protein (408 aa)
           
  0.477
VDL2
Precursor of protein violaxanthin deepoxidase-like protein (555 aa)
           
  0.474
VDE
Violaxanthin deepoxidase (262 aa)
     
   
  0.467
ZEP3
Zeaxanthin epoxidase (391 aa)
           
  0.463
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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