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STRINGSTRING
Phatr8842 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8842" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8842Predicted protein (379 aa)    
Predicted Functional Partners:
Phatr8777
Predicted protein (110 aa)
     
 
  0.993
Phatr25666
Predicted protein (885 aa)
     
   
  0.990
Phatr14145
Predicted protein (516 aa)
     
      0.988
Phatr16814
Predicted protein (662 aa)
     
   
  0.983
Phatr8457
Predicted protein (59 aa)
     
   
  0.981
Phatr18579
Predicted protein (510 aa)
     
      0.980
Phatr14032
Predicted protein; Belongs to the DEAD box helicase family (467 aa)
     
      0.977
Phatr18258
Predicted protein (743 aa)
     
   
  0.977
Phatr11703
Predicted protein (820 aa)
     
   
  0.976
Phatr12144
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (220 aa)
     
      0.974
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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