STRINGSTRING
Phatr8842 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8842" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8842Predicted protein (379 aa)    
Predicted Functional Partners:
Phatr8777
Predicted protein (110 aa)
     
 
  0.985
Phatr14145
Predicted protein (516 aa)
     
 
  0.984
Phatr47058
Predicted protein (606 aa)
     
      0.980
Phatr45727
Predicted protein (948 aa)
     
      0.980
Phatr18579
Predicted protein (510 aa)
     
      0.968
Phatr27735
Predicted protein (538 aa)
     
        0.964
Phatr14032
Predicted protein (467 aa)
     
      0.962
Phatr25666
Predicted protein (885 aa)
     
   
  0.960
Phatr12144
Predicted protein (220 aa)
     
      0.959
Phatr16814
Predicted protein (662 aa)
     
   
  0.958
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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