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STRINGSTRING
Phatr8918 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8918" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8918Predicted protein (190 aa)    
Predicted Functional Partners:
Phatr45698
Predicted protein (908 aa)
     
 
  0.919
Phatr50446
Predicted protein (1157 aa)
     
 
  0.814
Phatr12394
Predicted protein (260 aa)
           
  0.655
Phatr32759
Predicted protein (879 aa)
     
 
  0.597
Phatr47817
Predicted protein (913 aa)
           
  0.582
Phatr46855
Predicted protein (245 aa)
           
  0.575
Phatr14850
Predicted protein (653 aa)
     
 
  0.525
CUL1_2
CULlin protein 4; Belongs to the cullin family (821 aa)
     
 
  0.516
DDB1
Damage-specific DNA binding protein 1 (1284 aa)
       
 
  0.490
Phatr25000
Predicted protein; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene); Belongs to the acireductone dioxygenase (ARD) family (221 aa)
           
  0.408
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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