STRINGSTRING
Phatr8926 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8926" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8926Predicted protein (349 aa)    
Predicted Functional Partners:
Phatr27709
Predicted protein (640 aa)
   
  0.972
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
 
0.967
Phatr8112
Predicted protein (88 aa)
   
  0.910
Phatr16545
Predicted protein (167 aa)
   
  0.910
Phatr13445
Predicted protein (164 aa)
   
  0.910
Phatr11830
Predicted protein (161 aa)
   
  0.910
Phatr10666
Predicted protein (102 aa)
   
  0.910
Phatr33493
Predicted protein (684 aa)
   
 
  0.741
Phatr18524
Predicted protein (766 aa)
   
 
  0.741
Phatr32202
Lysyl-tRNA synthetase (485 aa)
 
   
  0.670
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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