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Phatr8945 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8945" - Aminotransferase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8945Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (412 aa)    
Predicted Functional Partners:
Phatr49601
Alanine glyoxylate aminotransferase (465 aa)
   
   
  0.691
Phatr51092
Glutamine synthetase (416 aa)
   
   
  0.690
Phatr35101
Predicted protein (570 aa)
   
   
  0.624
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
           
  0.595
GltD
Synthase of glutamate synthase (580 aa)
           
  0.594
Phatr15968
Predicted protein (1387 aa)
     
   
  0.574
Phatr40880
Agmatinase; Belongs to the arginase family (416 aa)
   
   
  0.482
Phatr26649
O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis (512 aa)
   
 
  0.474
Phatr2217
Predicted protein (364 aa)
   
 
  0.474
Phatr15730
Predicted protein (442 aa)
   
 
  0.474
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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