Phatr8950 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Phatr8950

Predicted protein (252 aa)

Predicted Functional Partners:

Phatr42434

0.797

Phatr12969

0.672

hNpl4

0.607

Phatr34061

0.599

Phatr44360

0.581

hUfd2

0.571

Phatr28219

0.531

sUfd1

0.530

hUfd1

0.530

Phatr42625

0.510

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Phatr12969	Phatr8950	Phatr12969	Phatr8950	Predicted protein	Predicted protein	0.672
Phatr28219	Phatr42434	Phatr28219	Phatr42434	Predicted protein; Belongs to the AAA ATPase family	Predicted protein	0.531
Phatr28219	Phatr8950	Phatr28219	Phatr8950	Predicted protein; Belongs to the AAA ATPase family	Predicted protein	0.531
Phatr28219	hNpl4	Phatr28219	Phatr44044	Predicted protein; Belongs to the AAA ATPase family	Predicted protein	0.570
Phatr28219	hUfd1	Phatr28219	Phatr10963	Predicted protein; Belongs to the AAA ATPase family	Predicted protein	0.557
Phatr28219	sUfd1	Phatr28219	Phatr15795	Predicted protein; Belongs to the AAA ATPase family	Predicted protein	0.557
Phatr34061	Phatr42434	Phatr34061	Phatr42434	Predicted protein	Predicted protein	0.599
Phatr34061	Phatr42625	Phatr34061	Phatr42625	Predicted protein	Predicted protein	0.864
Phatr34061	Phatr44360	Phatr34061	Phatr44360	Predicted protein	Predicted protein	0.881
Phatr34061	Phatr8950	Phatr34061	Phatr8950	Predicted protein	Predicted protein	0.599
Phatr34061	hNpl4	Phatr34061	Phatr44044	Predicted protein	Predicted protein	0.898
Phatr34061	hUfd1	Phatr34061	Phatr10963	Predicted protein	Predicted protein	0.761
Phatr34061	hUfd2	Phatr34061	Phatr12538	Predicted protein	Predicted protein	0.712
Phatr34061	sUfd1	Phatr34061	Phatr15795	Predicted protein	Predicted protein	0.761
Phatr42434	Phatr28219	Phatr42434	Phatr28219	Predicted protein	Predicted protein; Belongs to the AAA ATPase family	0.531
Phatr42434	Phatr34061	Phatr42434	Phatr34061	Predicted protein	Predicted protein	0.599
Phatr42434	Phatr42625	Phatr42434	Phatr42625	Predicted protein	Predicted protein	0.510
Phatr42434	Phatr44360	Phatr42434	Phatr44360	Predicted protein	Predicted protein	0.581
Phatr42434	Phatr8950	Phatr42434	Phatr8950	Predicted protein	Predicted protein	0.797
Phatr42434	hNpl4	Phatr42434	Phatr44044	Predicted protein	Predicted protein	0.607

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About