STRINGSTRING
Phatr8950 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8950" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8950Predicted protein (252 aa)    
Predicted Functional Partners:
Phatr4937
Predicted protein (217 aa)
  
       
0.912
hNpl4
Predicted protein (473 aa)
      
  0.897
sUfd1
Predicted protein (191 aa)
      
  0.878
hUfd1
Predicted protein (202 aa)
      
  0.878
Phatr34061
Predicted protein (244 aa)
      
 
  0.855
hDer1-2
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (205 aa)
        
  0.845
sDer1-1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (163 aa)
        
  0.845
hDer1-1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (209 aa)
        
  0.845
sDer1-2
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (187 aa)
        
  0.845
Phatr41778
Predicted protein (284 aa)
      
  0.822
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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