STRINGSTRING
Phatr8996 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr8996" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr8996Predicted protein (343 aa)    
Predicted Functional Partners:
Phatr47992
Predicted protein (432 aa)
      
  0.888
Phatr29223
Predicted protein (439 aa)
        
0.875
Phatr44040
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase (812 aa)
          
    0.800
Phatr48170
Predicted protein (335 aa)
    
 
0.780
Phatr2845
Predicted protein (268 aa)
    
 
0.776
hCDK1
Predicted protein (380 aa)
    
 
0.774
hCDK7
Predicted protein (358 aa)
    
 
0.774
Phatr11368
Predicted protein (246 aa)
    
 
0.763
Phatr18559
40S ribosomal protein S6 (245 aa)
        
  0.759
Phatr44708
Predicted protein (790 aa)
        
  0.755
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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