STRINGSTRING
Phatr9020 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9020" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9020Predicted protein (364 aa)    
Predicted Functional Partners:
Phatr11954
Predicted protein (149 aa)
       
  0.982
Phatr47017
Predicted protein (1144 aa)
       
  0.930
Phatr48846
Predicted protein (627 aa)
       
  0.690
Phatr52450
Predicted protein (154 aa)
       
      0.634
Phatr4593
Predicted protein (182 aa)
 
 
  0.625
Phatr16719
Predicted protein (182 aa)
 
 
  0.625
Phatr19821
Predicted protein; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins (368 aa)
 
 
  0.604
PHATR_1494
Predicted protein (438 aa)
 
 
  0.565
Phatr39306
Predicted protein (296 aa)
       
      0.565
Phatr34971
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
       
      0.565
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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