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ZDS protein (Phaeodactylum tricornutum) - STRING interaction network
"ZDS" - Zeta-carotene desaturase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZDSZeta-carotene desaturase (495 aa)    
Predicted Functional Partners:
PSY
Phytoene synthase (309 aa)
 
 
  0.885
CRTISO1
Carotenoid isomerase (633 aa)
 
   
  0.807
CRTISO2
Carotenoid isomerase (635 aa)
 
   
  0.797
CRTISO3
Carotenoid isomerase (595 aa)
 
   
  0.796
CRTISO4
Carotenoid isomerase (598 aa)
 
   
  0.785
Phatr16955
Predicted protein (231 aa)
   
 
  0.779
Phatr13160
Predicted protein (314 aa)
   
 
  0.727
LCYB
Precursor of cyclase lycopene beta cyclase (261 aa)
     
   
  0.676
Phatr48985
Predicted protein (2198 aa)
   
 
  0.652
Phatr33756
Predicted protein (711 aa)
   
 
  0.652
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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