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STRINGSTRING
Phatr9123 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9123" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9123Predicted protein (52 aa)    
Predicted Functional Partners:
Arf1
Predicted protein; Belongs to the small GTPase superfamily. Arf family (184 aa)
       
 
  0.910
Phatr42942
Predicted protein (1474 aa)
     
 
  0.825
ARL1
Predicted protein; Belongs to the small GTPase superfamily. Arf family (184 aa)
       
 
  0.685
Phatr54417
Cohesin (1455 aa)
     
   
  0.672
CHC
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)
     
 
  0.665
Phatr10479
Predicted protein (300 aa)
     
 
  0.646
Sec7D
Predicted protein (2168 aa)
     
 
  0.621
Phatr49795
Predicted protein (449 aa)
       
 
  0.610
Phatr54143
Predicted protein (1695 aa)
     
 
  0.601
Sec7C
Predicted protein (1838 aa)
     
 
  0.601
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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