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Trx-o protein (Phaeodactylum tricornutum) - STRING interaction network
"Trx-o" - Thioredoxin in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trx-oThioredoxin (106 aa)    
Predicted Functional Partners:
Trx-f
Thioredoxin f (107 aa)
   
 
  0.740
RPN7
Regulatory proteasome non-atpase subunit 7 (330 aa)
     
      0.625
Phatr12104
Predicted protein (106 aa)
       
  0.613
RPN11
Regulatory proteasome non-atpase subunit 11 (311 aa)
     
      0.613
Phatr10788
Thioredoxin (117 aa)
   
 
  0.612
Phatr8171
Predicted protein (86 aa)
   
 
  0.551
Trx-y
Thioredoxin y (178 aa)
   
 
  0.534
Phatr30446
T-complex protein 1 subunit delta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (529 aa)
     
      0.516
Phatr29340
Ubiquitin carboxyl-terminal hydrolase (499 aa)
     
 
  0.504
Phatr47306
Predicted protein (193 aa)
       
  0.501
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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