STRINGSTRING
Phatr9185 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9185" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9185Predicted protein (541 aa)    
Predicted Functional Partners:
Phatr26649
Predicted protein; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis (512 aa)
       
      0.647
Phatr21290
Predicted protein (385 aa)
       
      0.647
Phatr11785
Predicted protein (631 aa)
       
      0.647
Phatr10674
Predicted protein (290 aa)
       
      0.647
TufA
Elongation factor Tu (426 aa)
       
   
0.598
Phatr10531
Predicted protein (512 aa)
       
      0.598
AP1mu
Predicted protein (439 aa)
       
      0.538
AP4mu
Predicted protein (470 aa)
       
      0.538
AP2mu
Predicted protein (425 aa)
       
      0.454
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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