STRINGSTRING
Phatr9255 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9255" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9255Predicted protein (278 aa)    
Predicted Functional Partners:
Phatr25360
Short-chain dehydrogenase/reductase acting with NAD or NADP as acceptor (327 aa)
       
  0.923
RNAse-H
Predicted protein (190 aa)
           
  0.510
ACC2
Biotin carboxylase (2282 aa)
     
 
  0.481
Phatr20677
Predicted protein (236 aa)
       
 
  0.474
Phatr10213
Predicted protein (182 aa)
       
 
  0.474
Phatr41807
Predicted protein (407 aa)
       
 
  0.472
Phatr49867
Predicted protein (248 aa)
     
 
  0.468
Phatr16376
Predicted protein (252 aa)
     
 
  0.468
ACC1
Acetyl-coa carboxylase (2092 aa)
     
 
  0.422
LAG1
Longevity assurance protein (332 aa)
     
 
  0.421
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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