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STRINGSTRING
Phatr9278 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9278" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9278Predicted protein (294 aa)    
Predicted Functional Partners:
Phatr8827
Predicted protein (219 aa)
     
 
  0.714
Phatr21543
Predicted protein (366 aa)
     
 
  0.677
Phatr16141
Predicted protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family (373 aa)
     
 
  0.619
H2A-m1
Histone H2A (138 aa)
       
 
  0.591
Phatr36284
Predicted protein (924 aa)
     
   
  0.585
Phatr51406
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family (297 aa)
     
 
  0.559
myst
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family (349 aa)
     
 
  0.559
Phatr45764
Predicted protein (1603 aa)
     
 
  0.507
Phatr45703
Predicted protein (2426 aa)
     
 
  0.507
H4-1a
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
     
 
  0.496
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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