STRINGSTRING
Phatr9283 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9283" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9283Predicted protein (623 aa)    
Predicted Functional Partners:
Phatr9538
Predicted protein (593 aa)
 
  0.965
Phatr19901
Predicted protein (900 aa)
   
  0.946
Phatr12902
Predicted protein (536 aa)
   
  0.938
LUT1-1
Lut1-1 (538 aa)
   
 
  0.896
CBP
Calcium binding protein (132 aa)
       
  0.819
CaM2
Calmodulin (154 aa)
       
  0.819
CaM1
Calmoduline (149 aa)
       
  0.819
Phatr21744
Predicted protein (149 aa)
       
  0.819
Phatr12894
Predicted protein (403 aa)
   
 
  0.793
Phatr25956
Predicted protein (272 aa)
 
 
  0.790
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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