STRINGSTRING
Phatr9308 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9308" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9308Predicted protein (310 aa)    
Predicted Functional Partners:
Phatr34898
Predicted protein (257 aa)
       
    0.903
Phatr26336
Predicted protein (179 aa)
       
    0.903
Phatr15948
Predicted protein (262 aa)
         
    0.900
Phatr9211
Predicted protein (310 aa)
   
   
 
0.801
Phatr45308
Ribokinase (709 aa)
   
 
  0.620
Phatr10546
Predicted protein (302 aa)
   
 
  0.620
Phatr51242
Predicted protein (342 aa)
   
 
  0.587
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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