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STRINGSTRING
Phatr9312 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9312" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9312Predicted protein (324 aa)    
Predicted Functional Partners:
secA
Protein translocase subunit secA; Belongs to the SecA family (935 aa)
 
 
  0.677
Phatr30466
Predicted protein (361 aa)
     
   
  0.493
Phatr10148
Predicted protein (129 aa)
   
 
  0.445
P5CS
Delta-1-pyrroline-5-carboxylate synthase; Delta l-pyrroline-5-carboxylate synthetase; In the C-terminal section; belongs to the gamma- glutamyl phosphate reductase family (747 aa)
         
  0.431
Phatr18027
Predicted protein (706 aa)
         
  0.431
Phatr43169
Predicted protein (404 aa)
     
   
  0.428
Phatr10835
Predicted protein; Translation initiation factor IF-2 (579 aa)
 
   
  0.424
Phatr21873
Predicted protein (406 aa)
 
   
  0.411
RpoT
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (576 aa)
     
   
  0.409
Phatr11652
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (186 aa)
 
   
  0.409
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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