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secA protein (Phaeodactylum tricornutum) - STRING interaction network
"secA" - Protein translocase subunit secA in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secAProtein translocase subunit secA (935 aa)    
Predicted Functional Partners:
Sec61alpha
Transport protein Sec61 alpha subunit (472 aa)
   
 
  0.962
Phatr9987
Predicted protein (350 aa)
       
  0.818
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
 
  0.780
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
 
  0.780
Phatr17029
Predicted protein (329 aa)
 
 
  0.737
Phatr9312
Predicted protein (324 aa)
 
 
  0.719
Phatr5537
Predicted protein (217 aa)
 
 
  0.719
Phatr3388
Predicted protein (319 aa)
 
 
  0.704
Phatr14599
Predicted protein (317 aa)
 
 
  0.701
Phatr9855
Predicted protein (358 aa)
 
 
  0.687
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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