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STRINGSTRING
secA protein (Phaeodactylum tricornutum) - STRING interaction network
"secA" - Protein translocase subunit secA in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secAProtein translocase subunit secA; Belongs to the SecA family (935 aa)    
Predicted Functional Partners:
Phatr9987
Predicted protein (350 aa)
 
  0.867
Sec61alpha
Transport protein Sec61 alpha subunit; Belongs to the SecY/SEC61-alpha family (472 aa)
   
 
  0.860
TufA
Predicted protein; Elongation factor Tu (426 aa)
   
 
  0.808
Phatr11799
Predicted protein (84 aa)
   
   
  0.711
Phatr49678
Predicted protein (729 aa)
       
 
  0.708
Phatr11652
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins (186 aa)
   
   
  0.699
Phatr10835
Predicted protein; Translation initiation factor IF-2 (579 aa)
 
   
  0.677
Phatr9312
Predicted protein (324 aa)
 
 
  0.677
Phatr17029
Predicted protein (329 aa)
 
 
  0.666
Phatr10847
Predicted protein (284 aa)
   
   
  0.656
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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