STRINGSTRING
Phatr9342 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9342" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9342Predicted protein (382 aa)    
Predicted Functional Partners:
Phatr41667
Autophagy-related protein 3 (302 aa)
     
  0.998
Phatr50303
Predicted protein (124 aa)
     
  0.997
sUbi
Ubiquitin-like protein (268 aa)
       
  0.811
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.811
Phatr49037
Predicted protein (205 aa)
       
  0.811
Phatr47293
Predicted protein (580 aa)
   
   
  0.775
Phatr48810
Ubiquitin carrier protein (220 aa)
       
  0.769
Phatr19901
Predicted protein (900 aa)
   
  0.761
Phatr43913
Predicted protein; Involved in autophagic vesicle formation (330 aa)
     
  0.739
SUMO
Small ubiquitin-like modifier (103 aa)
       
  0.717
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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