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Phatr9388 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9388" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9388Predicted protein; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors (297 aa)    
Predicted Functional Partners:
Phatr43532
Predicted protein (774 aa)
     
  0.720
Phatr35332
Predicted protein (468 aa)
       
 
  0.650
Phatr29223
Predicted protein (439 aa)
       
  0.609
Phatr45431
Predicted protein (1158 aa)
       
  0.424
Phatr8058
Predicted protein (79 aa)
       
  0.409
Phatr49093
Predicted protein (1260 aa)
       
  0.409
Phatr49054
Predicted protein (853 aa)
       
  0.409
Phatr48163
Predicted protein (783 aa)
       
  0.409
Phatr47422
Predicted protein (166 aa)
       
  0.409
Phatr45911
Predicted protein (325 aa)
       
  0.409
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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