• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr9446 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9446" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9446Predicted protein (220 aa)    
Predicted Functional Partners:
Phatr5532
Predicted protein (238 aa)
     
 
  0.925
Phatr36955
Predicted protein (132 aa)
     
 
  0.912
Phatr11462
Predicted protein (130 aa)
     
 
  0.912
Phatr42302
Predicted protein (289 aa)
     
   
  0.908
Phatr23472
tRNA (guanine(26)-N(2))-dimethyltransferase (504 aa)
     
   
  0.905
Phatr50302
Predicted protein (249 aa)
           
  0.904
Phatr50848
Elongator complex protein 3; Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (544 aa)
   
   
  0.900
Phatr46782
Predicted protein (352 aa)
     
   
  0.896
Phatr17967
Putative tRNA (cytidine(32)/guanosine(34)-2’-O)-methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (315 aa)
     
 
  0.890
Phatr3687
Predicted protein (239 aa)
     
   
  0.878
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (13%) [HD]