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STRINGSTRING
Phatr9476 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9476" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9476Predicted protein (341 aa)    
Predicted Functional Partners:
Phatr11021
Predicted protein (323 aa)
  0.999
DHLTA_4
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; Dihydrolipoamide acetyl transferase (525 aa)
 
  0.991
PDHB1
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2 (360 aa)
 
  0.974
pDLDH1
Lipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family (543 aa)
   
 
  0.937
DLDH
Dihydrolipoyl dehydrogenase (500 aa)
   
 
  0.937
Phatr20360
annotation not available (318 aa)
 
  0.926
Phatr43697
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family (356 aa)
   
 
  0.926
Phatr32849
Predicted protein (299 aa)
   
 
  0.926
Phatr28585
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family (326 aa)
   
 
  0.926
Phatr10779
Predicted protein (359 aa)
   
 
  0.926
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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