STRINGSTRING
Phatr9476 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9476" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9476Predicted protein (341 aa)    
Predicted Functional Partners:
Phatr11021
Predicted protein (323 aa)
  0.999
DHLTA_4
Dihydrolipoamide acetyl transferase (525 aa)
 
  0.995
PDHB1
Precursor of dehydrogenase pyruvate dehydrogenase E1 component beta subunit (360 aa)
  0.995
Phatr20360
Annotation not available (318 aa)
  0.988
pDLDH1
Lipoamide dehydrogenase (543 aa)
   
  0.979
DLDH
Dihydrolipoyl dehydrogenase (500 aa)
   
  0.979
Phatr43697
Branched-chain-amino-acid aminotransferase (356 aa)
   
  0.939
Phatr32849
Predicted protein (299 aa)
   
  0.939
Phatr28585
Branched-chain-amino-acid aminotransferase (326 aa)
   
  0.939
Phatr10779
Predicted protein (359 aa)
   
  0.939
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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