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STRINGSTRING
Phatr9538 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9538" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9538Predicted protein (593 aa)    
Predicted Functional Partners:
Phatr44482
Predicted protein (600 aa)
   
 
  0.989
Phatr25956
Predicted protein (272 aa)
 
  0.988
Phatr54983
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
   
   
  0.955
Phatr54915
Eukaryotic cysteine synthase (356 aa)
   
 
  0.939
Phatr49903
Predicted protein (654 aa)
   
  0.931
Phatrdraft542
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family (336 aa)
   
 
  0.928
Phatr46040
Predicted protein (359 aa)
   
  0.923
Phatr46031
Predicted protein (359 aa)
   
  0.923
Phatr17215
Predicted protein (297 aa)
   
  0.923
Phatr49591
Predicted protein (202 aa)
     
  0.922
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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