STRINGSTRING
Phatr9538 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9538" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9538Predicted protein (593 aa)    
Predicted Functional Partners:
Phatr19901
Predicted protein (900 aa)
   
 
  0.995
Phatr25956
Predicted protein (272 aa)
 
 
  0.988
Phatr9283
Predicted protein (623 aa)
 
  0.965
Phatr12813
Ferredoxin--NADP reductase (298 aa)
 
  0.964
Phatr42018
Ferredoxin--NADP reductase (320 aa)
 
  0.964
Phatr23717
Ferredoxin--NADP reductase (340 aa)
 
  0.964
Phatr15777
Ferredoxin--NADP reductase (299 aa)
 
  0.964
Phatrdraft542
Cysteine synthase (336 aa)
   
 
  0.960
Phatr54915
Eukaryotic cysteine synthase (356 aa)
   
 
  0.960
Phatr7755
Predicted protein (88 aa)
 
  0.956
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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