STRINGSTRING
Phatr9554 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9554" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9554Predicted protein (78 aa)    
Predicted Functional Partners:
Phatr51291
Predicted protein (121 aa)
   
  0.998
Phatr50886
Predicted protein (145 aa)
   
  0.998
Phatr50701
Predicted protein (143 aa)
   
  0.998
Phatr33660
Predicted protein (253 aa)
   
  0.998
Phatr30486
Predicted protein (146 aa)
   
  0.998
Phatr29097
Predicted protein (225 aa)
   
  0.998
Phatr28147
Predicted protein (62 aa)
   
  0.998
rps19
Predicted protein (147 aa)
   
  0.998
Phatr23691
Predicted protein (130 aa)
   
  0.998
Phatr17324
Predicted protein (261 aa)
   
  0.997
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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