STRINGSTRING
Phatr9576 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9576" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9576Predicted protein (254 aa)    
Predicted Functional Partners:
Phatr42429
Predicted protein (625 aa)
     
  0.990
Phatr18735
Predicted protein (442 aa)
     
  0.978
Phatr10354
Predicted protein (653 aa)
     
  0.978
Phatr54813
Predicted protein (322 aa)
     
  0.977
Phatr9231
Predicted protein (107 aa)
       
  0.971
Phatr43176
Predicted protein (464 aa)
     
  0.911
Phatr10102
Predicted protein (214 aa)
     
  0.798
Phatr23959
Predicted protein; Binds the poly(A) tail of mRNA (605 aa)
     
  0.774
Phatr47992
Predicted protein (432 aa)
       
  0.742
Phatr11337
Predicted protein (319 aa)
       
 
  0.740
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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