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STRINGSTRING
Phatr9625 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9625" - Presenilin in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9625Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors; Belongs to the peptidase A22A family (252 aa)    
Predicted Functional Partners:
Phatr43532
Predicted protein (774 aa)
     
 
  0.911
Phatr46058
Formin like protein (2015 aa)
     
   
  0.793
Phatr29223
Predicted protein; Belongs to the protein kinase superfamily (439 aa)
     
 
  0.692
Phatr46389
Predicted protein; Belongs to the peptidase A1 family (647 aa)
       
 
  0.659
Phatr14756
Predicted protein (308 aa)
       
 
  0.625
Phatr24547
Predicted protein (506 aa)
       
 
  0.588
Phatr41172
Calreticulin (390 aa)
       
 
  0.473
Phatr45596
Predicted protein (736 aa)
       
 
  0.473
Phatr42720
Predicted protein (694 aa)
       
 
  0.473
Phatr35332
Predicted protein (468 aa)
       
 
  0.473
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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