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STRINGSTRING
Phatr9829 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9829" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9829Predicted protein; Belongs to the eukaryotic initiation factor 4E family (181 aa)    
Predicted Functional Partners:
Phatr47943
Predicted protein (1167 aa)
     
  0.963
Phatr44298
Predicted protein (1736 aa)
     
  0.963
Phatr23959
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA (605 aa)
     
 
  0.840
Phatr9731
Predicted protein; Belongs to the eukaryotic initiation factor 4E family (155 aa)
         
0.824
Phatr18559
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family (245 aa)
     
 
  0.818
Phatr49355
Predicted protein (549 aa)
     
 
  0.815
Phatr16987
Predicted protein; Belongs to the DEAD box helicase family (404 aa)
     
 
  0.811
Phatr45848
Predicted protein (276 aa)
     
 
  0.810
Phatr44459
Predicted protein; Belongs to the eukaryotic initiation factor 4E family (203 aa)
         
 
0.800
Phatr13520
Nuclear cap-binding protein subunit 2 (127 aa)
     
 
  0.786
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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