STRINGSTRING
Phatr9832 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9832" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9832Predicted protein (187 aa)    
Predicted Functional Partners:
Phatr7108
Predicted protein (138 aa)
       
  0.947
Phatr28833
Predicted protein (464 aa)
       
  0.947
Phatr47293
Predicted protein (580 aa)
   
 
    0.439
Phatr45841
Predicted protein (331 aa)
           
  0.428
Phatr16932
Predicted protein (361 aa)
           
  0.428
Phatrdraft1613
Predicted protein (1187 aa)
   
   
  0.406
Phatr21548
Predicted protein (1360 aa)
   
   
  0.406
Phatr24362
Predicted protein (328 aa)
           
  0.403
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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