STRINGSTRING
Phatr9860 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9860" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9860Predicted protein (318 aa)    
Predicted Functional Partners:
Phatr6698
Predicted protein (106 aa)
      
  0.982
NURF-55
Chromatin assembly factor subunit c (466 aa)
      
  0.910
Phatr6093
Predicted protein (144 aa)
      
  0.815
H3-1a
Histone H3 (136 aa)
        
  0.748
Phatr50695
Histone H3 (136 aa)
        
  0.748
H3.3
Histone H3 (136 aa)
        
  0.748
Phatr16843
Histone H3 (104 aa)
        
  0.748
Phatr11841
Histone H3 (136 aa)
        
  0.748
Phatr43708
Predicted protein (501 aa)
      
  0.746
PHATR_7553
Predicted protein (121 aa)
        
  0.745
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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