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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr9879 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9879" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9879Predicted protein (188 aa)    
Predicted Functional Partners:
Phatr13606
Predicted protein (338 aa)
           
  0.778
Phatr51242
Predicted protein (342 aa)
   
   
  0.659
Phatr41875
Predicted protein (302 aa)
   
   
  0.652
Phatr1769
Predicted protein (395 aa)
           
  0.636
Phatr6834
Predicted protein (143 aa)
         
  0.586
Phatr31494
Predicted protein (221 aa)
     
   
  0.580
Phatr36634
Predicted protein (323 aa)
     
 
  0.455
Phatr15948
Predicted protein (262 aa)
   
   
  0.410
Phatr25572
Predicted protein (470 aa)
     
   
  0.402
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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