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STRINGSTRING
Phatr9893 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9893" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9893Predicted protein; Belongs to the DEAD box helicase family (455 aa)    
Predicted Functional Partners:
Phatr5424
Predicted protein (154 aa)
     
 
  0.983
Phatr25666
Predicted protein (885 aa)
 
 
 
  0.981
Phatr51007
Predicted protein (296 aa)
     
 
  0.981
Phatr708
Predicted protein (511 aa)
     
 
  0.976
Phatr23865
Predicted protein (720 aa)
     
 
  0.973
Phatr43822
Predicted protein (341 aa)
     
 
  0.971
Phatr13820
Predicted protein (282 aa)
     
 
  0.969
Phatr17974
Predicted protein (475 aa)
     
   
  0.959
Phatr11894
Predicted protein (209 aa)
     
 
  0.946
Phatr45888
Predicted protein (590 aa)
     
 
  0.943
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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