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STRINGSTRING
CCL1 protein (Phaeodactylum tricornutum) - STRING interaction network
"CCL1" - Coumaryl-coa ligase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCL1Coumaryl-coa ligase (523 aa)    
Predicted Functional Partners:
Phatr41702
Predicted protein (671 aa)
   
   
  0.643
KCT1
Beta-ketoacyl-coa thiolase; Belongs to the thiolase family (386 aa)
   
   
  0.626
AOX1
Precursor of oxidase acyl-coa oxidase; Belongs to the acyl-CoA oxidase family (706 aa)
   
   
  0.618
Phatr44189
Predicted protein (1560 aa)
   
   
  0.607
Phatr25183
Predicted protein; Belongs to the ATCase/OTCase family (334 aa)
     
   
  0.599
Phatr45947
Predicted protein; Belongs to the thiolase family (403 aa)
   
   
  0.576
Phatr50623
Predicted protein (382 aa)
     
   
  0.470
Phatr49500
Predicted protein (1011 aa)
 
   
  0.461
Phatr11014
Predicted protein (677 aa)
   
   
  0.448
ACD1
Short chain acyl-coenzyme A dehydrogenase (436 aa)
 
   
  0.425
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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