STRINGSTRING
Phatr9904 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9904" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9904Predicted protein (276 aa)    
Predicted Functional Partners:
Phatr20504
Annotation not available (886 aa)
         
  0.632
TPS2
Bifunctional trehalose-6-phosphate synthase (779 aa)
         
  0.632
Phatr5857
Predicted protein (186 aa)
   
 
  0.598
GPI_3
Glucose-6-phosphate isomerase (518 aa)
   
 
  0.598
GPI_1
Glucose-6-phosphate isomerase (554 aa)
   
 
  0.598
GPI_2
Glucose-6-phosphate isomerase (551 aa)
   
 
  0.598
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
   
  0.523
Phatr44639
Predicted protein (498 aa)
       
 
  0.497
Phatr49748
Predicted protein (2821 aa)
       
      0.443
Phatr44942
Predicted protein (556 aa)
       
      0.443
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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