• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr9929 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9929" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9929Predicted protein (196 aa)    
Predicted Functional Partners:
Phatr13820
Predicted protein (282 aa)
     
 
  0.999
Phatr6258
Predicted protein (205 aa)
     
 
  0.998
Phatr26035
Predicted protein (266 aa)
     
 
  0.997
Phatr19647
Predicted protein (354 aa)
     
 
  0.997
Phatr12144
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (220 aa)
     
 
  0.997
Phatr30019
Predicted protein (299 aa)
     
 
  0.996
Phatr44047
Predicted protein (463 aa)
     
 
  0.995
Phatr31725
Predicted protein (629 aa)
     
 
  0.994
Phatr17974
Predicted protein (475 aa)
     
 
  0.993
Phatr7346
Predicted protein (134 aa)
   
   
  0.993
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (8%) [HD]