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Phatr9987 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9987" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9987Predicted protein (350 aa)    
Predicted Functional Partners:
Phatr15848
Predicted protein (206 aa)
 
  0.927
secA
Protein translocase subunit secA (935 aa)
       
  0.818
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.727
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
   
  0.669
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
   
  0.669
Phatr11434
Predicted protein (357 aa)
   
 
  0.646
Phatr11288
Predicted protein (357 aa)
   
 
  0.646
Phatr30572
Predicted protein (462 aa)
   
 
  0.628
Phatr15374
Predicted protein (442 aa)
   
 
  0.628
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
   
  0.610
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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