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STRINGSTRING
Phatr9987 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9987" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9987Predicted protein (350 aa)    
Predicted Functional Partners:
Phatr15848
Predicted protein (206 aa)
 
 
  0.963
secA
Protein translocase subunit secA; Belongs to the SecA family (935 aa)
 
  0.867
Phatr11434
Predicted protein (357 aa)
   
   
  0.805
Phatr11288
Predicted protein (357 aa)
   
   
  0.805
Phatr29824
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1177 aa)
   
   
  0.734
Phatr17198
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1052 aa)
   
   
  0.702
Phatr37266
Predicted protein (172 aa)
   
 
  0.623
Phatr9894
Predicted protein (140 aa)
 
   
  0.579
TufA
Predicted protein; Elongation factor Tu (426 aa)
   
   
  0.573
Phatr11189
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (729 aa)
 
 
  0.518
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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