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STRINGSTRING
Phatr9989 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr9989" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr9989Predicted protein; Belongs to the DEAD box helicase family (620 aa)    
Predicted Functional Partners:
Phatr47058
Predicted protein (606 aa)
     
      0.980
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
 
  0.977
Phatr45828
Predicted protein (805 aa)
     
   
  0.975
Phatr15481
Predicted protein (482 aa)
     
      0.974
Phatr11894
Predicted protein (209 aa)
     
 
  0.964
Phatr708
Predicted protein (511 aa)
     
 
  0.948
helicase_6
Predicted protein; Belongs to the DEAD box helicase family (476 aa)
   
 
0.943
Phatr13281
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
 
  0.940
Phatr14145
Predicted protein (516 aa)
     
 
  0.938
Phatr25549
Predicted protein (512 aa)
   
 
0.937
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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