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Phatrdraft1025 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft1025" - Tocopherol cyclase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft1025Tocopherol cyclase (515 aa)    
Predicted Functional Partners:
Phatr37858
Predicted protein (398 aa)
 
   
  0.978
Phatr33530
Predicted protein (392 aa)
       
  0.956
TMT
Tocopherol o-methyltransferase (318 aa)
       
  0.956
Phatr2738
Predicted protein (235 aa)
 
   
  0.665
Phatr43981
Predicted protein (418 aa)
       
  0.578
Phatr10824
Predicted protein (304 aa)
       
  0.578
Phatr33845
Predicted protein (315 aa)
   
          0.525
Phatr6402
Predicted protein (170 aa)
   
          0.524
Phatr3527
Predicted protein (233 aa)
   
        0.523
Phatr46071
Predicted protein (180 aa)
   
        0.518
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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