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STRINGSTRING
PGP protein (Phaeodactylum tricornutum) - STRING interaction network
"PGP" - 2-phosphoglycolate phosphatase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGP2-phosphoglycolate phosphatase (314 aa)    
Predicted Functional Partners:
GOX
Glycolate oxidase (381 aa)
     
 
  0.957
Phatr46806
Predicted protein (463 aa)
 
 
        0.589
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (464 aa)
     
   
  0.536
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (501 aa)
     
   
  0.536
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (473 aa)
     
   
  0.534
Phatr11358
Predicted protein (184 aa)
           
  0.533
GDCT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family (421 aa)
   
   
  0.468
Phatr15063
Predicted protein (225 aa)
 
            0.405
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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