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MPDC protein (Phaeodactylum tricornutum) - STRING interaction network
"MPDC" - Diphosphomevalonate decarboxylase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MPDCDiphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes (415 aa)    
Predicted Functional Partners:
Phatr49325
Predicted protein; Belongs to the FPP/GGPP synthase family (343 aa)
   
 
  0.995
MK
Mevalonate kinase (490 aa)
 
   
  0.992
Phatr16649
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase (461 aa)
 
 
  0.989
Phatr47271
Predicted protein; Belongs to the FPP/GGPP synthase family (330 aa)
   
  0.984
Phatr12972
Predicted protein (247 aa)
   
 
  0.984
Phatr12533
Predicted protein (222 aa)
   
 
  0.984
HDR
Hydroxymethylbutenyl diphosphate reductase; Putative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase (401 aa)
         
  0.979
PHATR_645
Terpene cyclase/mutase family member; Acetyl-coenzyme A synthetase; Belongs to the terpene cyclase/mutase family (678 aa)
   
 
  0.965
Phatr19000
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family (337 aa)
   
 
  0.962
Phatr16870
3-hydroxy-3-methylglutaryl coenzyme A reductase (367 aa)
 
   
  0.953
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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