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MPDC protein (Phaeodactylum tricornutum) - STRING interaction network
MPDC mevalonate diphosphate decarboxylase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MPDCMPDC mevalonate diphosphate decarboxylase (415 aa)    
Predicted Functional Partners:
Phatr12972
Predicted protein (247 aa)
   
 
  0.972
Phatr12533
Predicted protein (222 aa)
   
 
  0.972
Phatr49325
Predicted protein (343 aa)
   
  0.952
Phatr47271
Predicted protein (330 aa)
   
  0.950
Phatr19000
Farnesyltranstransferase (337 aa)
   
  0.928
HDR
Putative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase (401 aa)
         
  0.904
Phatr16649
Predicted protein (461 aa)
 
 
  0.882
MK
Mevalonate kinase (490 aa)
   
 
  0.863
Phatr50804
Glycolate oxidase (431 aa)
       
  0.667
GOX
Glycolate oxidase (381 aa)
       
  0.667
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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