STRINGSTRING
Phatrdraft1384 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft1384" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft1384Predicted protein (343 aa)    
Predicted Functional Partners:
Phatr21354
Predicted protein (422 aa)
   
 
  0.862
Phatr32550
Predicted protein (393 aa)
   
 
  0.740
Phatr20787
Predicted protein (473 aa)
     
 
  0.712
Phatr15689
Predicted protein (441 aa)
     
 
  0.712
Phatr10319
Predicted protein (1032 aa)
     
 
  0.712
Phatr16147
Predicted protein (200 aa)
   
 
  0.682
Phatr26515
Predicted protein (272 aa)
     
 
  0.656
Phatr14260
Predicted protein (163 aa)
     
  0.640
Phatr14770
Predicted protein (171 aa)
   
   
  0.622
Phatr9161
Predicted protein (229 aa)
     
   
  0.439
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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