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Phatrdraft1613 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft1613" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft1613Predicted protein (1187 aa)    
Predicted Functional Partners:
Phatr21548
Predicted protein (1360 aa)
         
 
0.800
Phatr51157
Actin/actin like proteinPredicted protein (377 aa)
       
  0.571
ARP1
Actin related protein (391 aa)
       
  0.571
ACT1
Actin/actin like proteinPredicted protein (377 aa)
       
  0.571
Act2
Actin (377 aa)
       
  0.571
sUbi
Ubiquitin-like protein (268 aa)
       
  0.568
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.568
Phatr49037
Predicted protein (205 aa)
       
  0.568
Phatr31433
Predicted protein (641 aa)
   
 
  0.558
Phatr5128
Predicted protein; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (197 aa)
       
  0.557
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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