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STRINGSTRING
Phatrdraft1619 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft1619" - Phosphodiesterase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft1619Phosphodiesterase (515 aa)    
Predicted Functional Partners:
Phatr45443
Carbonic anhydrase; Reversible hydration of carbon dioxide (273 aa)
           
  0.570
Phatr51305
Carbonic anhydrase; Reversible hydration of carbon dioxide (282 aa)
           
  0.484
Act2
Actin/actin like protein; Actin; Belongs to the actin family (377 aa)
           
  0.455
Lhcr11
Protein fucoxanthin chl a/c protein (246 aa)
           
  0.455
Phatr46448
Predicted protein; Belongs to the small heat shock protein (HSP20) family (281 aa)
     
   
  0.451
Phatr48100
Predicted protein (404 aa)
   
          0.448
Phatrdraft598
Predicted protein (313 aa)
   
          0.447
Phatr48862
Predicted protein (331 aa)
   
          0.447
Phatr30823
Predicted protein (343 aa)
   
          0.446
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (614 aa)
   
 
  0.436
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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