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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatrdraft1642 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft1642" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft1642Predicted protein (584 aa)    
Predicted Functional Partners:
Phatr42595
Predicted protein (476 aa)
     
   
  0.671
Phatr21682
Predicted protein (416 aa)
     
   
  0.633
Phatr48109
Predicted protein (857 aa)
           
  0.539
Phatr48391
Predicted protein (425 aa)
           
  0.470
Phatr35781
Predicted protein (385 aa)
           
  0.470
Phatr18559
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family (245 aa)
       
      0.432
Phatr46848
Predicted protein (577 aa)
     
   
  0.405
Phatr33584
Predicted protein (797 aa)
     
   
  0.405
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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