STRINGSTRING
Phatrdraft1660 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft1660" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft1660Predicted protein (413 aa)    
Predicted Functional Partners:
Phatr16814
Predicted protein (662 aa)
     
 
  0.905
Phatr14145
Predicted protein (516 aa)
     
 
  0.905
Phatr19647
Predicted protein (354 aa)
     
 
  0.874
Phatr47058
Predicted protein (606 aa)
     
      0.873
Phatr32036
Predicted protein (801 aa)
     
      0.867
Phatr43105
Predicted protein (455 aa)
     
 
  0.867
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
 
  0.867
Phatr8777
Predicted protein (110 aa)
     
 
  0.866
Phatr45356
Predicted protein (479 aa)
     
 
  0.862
Phatr13281
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
   
 
  0.840
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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